JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP6_chr17_5111032_5179991	0/0	c0033	4221	1	0	1	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	1/0	c0034	4221	1	0	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0035	4221	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0036	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0037	4221	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP7_chr16_8887097_8968906	1/1	c0001	3309	322	87	53	137	8	35	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	c0002	3309	10	0	8	2	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	c0003	3309	2	1	1	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	c0004	3309	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	c0005	3309	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	c0006	3309	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	c0007	3309	1	0	0	0	0	1	copy fasta	USP7	chr16	8887097	8968906
USP8_chr15_50419405_50519421	1/1	c0001	3357	267	42	44	142	10	27	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0002	3357	40	28	4	6	0	2	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0003	3357	29	0	0	26	1	2	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0004	3357	21	2	12	0	0	7	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0005	3357	5	5	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0006	3357	3	3	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0007	3357	3	2	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0008	3357	3	3	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0009	3357	2	0	1	0	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0010	3357	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0011	3357	2	2	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0012	3357	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0013	3357	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0014	3357	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0015	3357	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	c0016	3357	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP9X_chrX_41080445_41241579	1/1	c0001	7665	267	51	54	123	9	28	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0002	7665	11	11	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0003	7665	3	0	0	3	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0004	7665	3	3	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0005	7665	2	2	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0006	7667	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0007	7664	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0008	7665	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0009	7663	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0010	7666	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0011	7665	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	c0012	7665	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9Y_chrY_12696231_12865839	1/1	c0001	7668	75	1	15	36	5	16	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0002	7668	24	15	2	7	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0003	7668	20	0	0	20	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0004	7668	4	0	0	4	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0005	7668	1	1	0	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0006	7668	1	0	0	1	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0007	7668	1	0	1	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0008	7668	1	0	0	1	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0009	7668	1	0	1	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0010	7668	1	1	0	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839