JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP9Y_chrY_12696231_12865839	0/0	c0011	7668	1	0	1	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	c0012	7668	1	0	0	1	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USPL1_chr13_30612920_30665766	1/0	c0001	3279	135	13	29	73	7	12	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/1	c0002	3279	104	44	19	20	5	15	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0003	3279	27	0	3	18	2	4	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0004	3279	17	14	3	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0005	3279	6	6	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0006	3279	4	2	1	0	0	1	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0007	3279	2	0	0	0	0	2	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0008	3279	2	0	0	2	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0009	3279	2	2	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0010	3279	2	2	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0011	3279	1	0	1	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0012	3279	1	1	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0013	3279	1	0	0	1	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0014	3279	1	0	0	0	0	1	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	c0015	3279	1	0	0	0	0	1	copy fasta	USPL1	chr13	30612920	30665766
UST_chr6_148742030_149081990	1/1	c0001	1221	180	62	29	61	4	22	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	c0002	1221	17	7	3	6	0	1	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	c0003	1221	6	6	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	c0004	1221	3	0	0	0	0	3	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	c0005	1221	2	2	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UTF1_chr10_133225217_133236558	0/0	c0001	1026	199	28	43	92	11	25	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	1/0	c0002	1026	125	38	23	50	3	10	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/1	c0003	1026	36	1	9	14	1	10	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0004	1026	17	16	1	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0005	1027	5	1	0	3	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0006	1027	3	0	0	1	0	2	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0007	1026	3	0	0	3	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0008	1026	3	3	0	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0009	1027	2	0	1	1	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0010	1026	2	2	0	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0011	1026	1	0	0	1	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0012	1026	1	0	1	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0013	1026	1	1	0	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0014	1026	1	0	0	0	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0015	1027	1	0	0	1	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0016	1026	1	0	0	0	1	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0017	1026	1	0	0	0	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0018	1026	1	1	0	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	c0019	1026	1	1	0	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTP11_chr1_38007734_38029820	1/1	c0001	762	366	89	60	157	16	42	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	c0002	762	1	0	0	1	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	c0003	762	1	1	0	0	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP14A_chrX_129901164_129934752	1/1	c0001	2316	200	64	36	70	7	21	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0002	2316	51	2	5	35	3	6	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0003	2316	3	3	0	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0004	2316	2	0	0	0	0	2	copy fasta	UTP14A	chrX	129901164	129934752