JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UTP14A_chrX_129901164_129934752	0/0	c0005	2316	2	1	1	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0006	2317	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0007	2314	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0008	2316	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0009	2316	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0010	2297	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0011	2315	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0012	2316	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0013	2316	1	1	0	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0014	2313	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0015	2316	1	1	0	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0016	2315	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0017	2316	1	0	0	0	1	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0018	2317	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0019	2316	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	c0020	2316	1	0	0	0	0	1	copy fasta	UTP14A	chrX	129901164	129934752
UTP14C_chr13_52019691_52038600	1/1	c0001	2301	160	39	22	76	2	19	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0002	2301	160	12	38	86	7	17	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0003	2301	37	4	15	11	4	3	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0004	2301	21	20	1	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0005	2301	7	2	2	0	1	2	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0006	2301	2	2	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0007	2301	1	0	0	0	0	1	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0008	2301	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0009	2301	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0010	2301	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	c0011	2301	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP15_chr5_73560743_73588380	1/1	c0001	1557	277	62	56	115	9	33	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0002	1557	33	4	13	9	4	3	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0003	1557	26	1	3	16	3	3	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0004	1557	16	14	2	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0005	1557	3	3	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0006	1557	2	2	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0007	1557	2	1	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0008	1557	1	0	0	0	0	1	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0009	1557	1	0	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0010	1557	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0011	1557	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0012	1557	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0013	1557	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	c0014	1557	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP18_chr17_51255546_51302933	1/0	c0001	1671	138	26	35	57	7	12	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0002	1671	112	12	24	53	4	19	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/1	c0003	1671	34	17	11	0	1	4	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0004	1671	33	1	4	20	2	6	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0005	1671	17	17	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0006	1671	16	16	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0007	1671	2	0	0	2	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0008	1671	2	0	0	2	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0009	1671	2	1	0	1	0	0	copy fasta	UTP18	chr17	51255546	51302933