JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UTP18_chr17_51255546_51302933	0/0	c0010	1671	1	1	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0011	1671	1	1	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0012	1671	1	0	0	0	0	1	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0013	1671	1	0	0	0	0	1	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0014	1671	1	0	1	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0015	1671	1	0	0	0	0	1	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0016	1671	1	1	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0017	1671	1	1	0	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0018	1671	1	0	1	0	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP18_chr17_51255546_51302933	0/0	c0019	1671	1	0	0	1	0	0	copy fasta	UTP18	chr17	51255546	51302933
UTP20_chr12_101275105_101391618	0/0	c0001	8358	73	4	12	48	2	7	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0002	8358	65	3	7	54	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0003	8358	60	9	22	9	7	13	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0004	8358	35	29	2	0	0	4	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0005	8358	25	1	9	4	4	7	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/1	c0006	8358	17	0	1	14	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0007	8358	9	9	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0008	8358	6	5	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0009	8358	5	5	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0010	8358	4	4	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0011	8358	3	0	0	3	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0012	8358	3	0	0	3	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0013	8358	3	1	2	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0014	8358	2	0	0	0	0	2	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0015	8358	2	0	1	0	1	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0016	8358	2	0	1	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0017	8358	2	0	2	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0018	8358	2	2	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0019	8358	2	0	0	0	1	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0020	8358	2	2	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0021	8358	2	2	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0022	8358	2	0	1	0	1	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0023	8358	2	2	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0024	8358	2	1	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0025	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0026	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0027	8358	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0028	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0029	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0030	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	1/0	c0031	8358	1	0	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0032	8358	1	0	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0033	8358	1	0	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0034	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0035	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0036	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0037	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0038	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0039	8358	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0040	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618