JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UTP20_chr12_101275105_101391618	0/0	c0041	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0042	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0043	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0044	8358	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0045	8358	1	0	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0046	8358	1	0	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0047	8358	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0048	8358	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0049	8358	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	c0050	8358	1	1	0	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP23_chr8_116761524_116779684	1/1	c0001	750	317	45	68	162	14	26	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	c0002	750	25	16	0	2	1	6	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	c0003	750	21	13	3	0	1	4	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	c0004	747	15	14	1	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	c0005	750	4	4	0	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	c0006	750	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	c0007	750	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP25_chr1_209822972_209862565	0/0	c0001	2271	179	41	31	75	9	23	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	1/1	c0002	2271	166	17	29	104	5	9	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0003	2271	48	6	9	23	4	6	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0004	2271	12	12	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0005	2271	3	0	0	3	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0006	2271	3	0	2	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0007	2271	3	2	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0008	2271	2	2	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0009	2271	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0010	2271	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0011	2271	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0012	2271	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0013	2271	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0014	2271	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0015	2271	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0016	2271	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0017	2271	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0018	2271	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0019	2271	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0020	2271	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0021	2271	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	c0022	2271	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP3_chr4_70683532_70695551	1/1	c0001	1440	349	82	72	137	16	40	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	c0002	1440	4	4	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	c0003	1440	4	4	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	c0004	1440	3	3	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	c0005	1440	1	1	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	c0006	1440	1	0	0	1	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP4_chr16_69127649_69174021	1/1	c0001	2061	265	85	52	80	13	33	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0002	2061	14	5	2	5	1	1	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0003	2061	4	0	1	1	0	2	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0004	2061	2	0	2	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0005	2061	2	2	0	0	0	0	copy fasta	UTP4	chr16	69127649	69174021