JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UTP4_chr16_69127649_69174021	0/0	c0006	2061	1	1	0	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0007	2061	1	1	0	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0008	2061	1	0	0	0	0	1	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0009	2061	1	0	0	0	0	1	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	c0010	2061	1	0	1	0	0	0	copy fasta	UTP4	chr16	69127649	69174021
UTP6_chr17_31855904_31906708	1/1	c0001	1794	205	75	37	59	7	25	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0002	1794	89	5	15	54	5	10	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0003	1794	7	7	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0004	1794	5	5	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0005	1794	3	0	3	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0006	1794	3	3	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0007	1794	2	0	0	2	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0008	1794	2	0	0	2	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0009	1794	2	0	0	2	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0010	1794	1	0	0	0	0	1	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0011	1794	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0012	1794	1	0	1	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0013	1794	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0014	1794	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	c0015	1794	1	1	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTRN_chr6_144280335_144858034	0/0	c0001	10302	20	10	5	3	1	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/1	c0002	10302	16	3	3	8	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	1/0	c0003	10302	9	0	4	2	1	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0004	10302	6	1	2	1	0	2	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0005	10302	6	2	0	2	0	2	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0006	10302	4	4	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0007	10302	3	0	0	3	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0008	10302	3	1	2	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0009	10302	3	2	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0010	10302	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0011	10302	2	1	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0012	10302	2	0	1	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0013	10302	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0014	10302	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0015	10302	2	0	1	0	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0016	10302	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0017	10302	2	0	2	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0018	10302	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0019	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0020	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0021	10302	1	0	0	0	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0022	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0023	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0024	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0025	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0026	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0027	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0028	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0029	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0030	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034