JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UTRN_chr6_144280335_144858034	0/0	c0031	10302	1	0	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0032	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0033	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0034	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0035	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0036	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0037	10302	1	0	0	0	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0038	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0039	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0040	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0041	10302	1	0	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0042	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0043	10302	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0044	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0045	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0046	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0047	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0048	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0049	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0050	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0051	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0052	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0053	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0054	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0055	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0056	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0057	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	c0058	10302	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTS2B_chr3_191262168_191335526	0/1	c0001	360	207	18	45	114	7	22	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	1/0	c0002	360	184	68	25	67	5	18	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	c0003	360	3	3	0	0	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	c0004	360	2	0	0	2	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	c0005	360	2	2	0	0	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	c0006	360	2	0	0	2	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	c0007	360	1	0	0	1	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	c0008	360	1	1	0	0	0	0	copy fasta	UTS2B	chr3	191262168	191335526
UTS2R_chr17_82366765_82382458	1/1	c0001	1170	302	50	49	150	13	38	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0002	1170	49	21	21	0	3	4	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0003	1170	9	9	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0004	1170	6	5	1	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0005	1170	5	0	0	5	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0006	1170	4	4	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0007	1170	2	2	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0008	1170	1	0	1	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0009	1170	1	0	0	0	0	1	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0010	1170	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0011	1170	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0012	1170	1	0	0	1	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0013	1170	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	c0014	1170	1	0	0	0	0	1	copy fasta	UTS2R	chr17	82366765	82382458