JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UTS2_chr1_7842612_7858065	1/0	c0001	375	357	88	51	165	10	42	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	c0002	375	78	4	18	54	0	2	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/1	c0003	375	23	4	4	9	5	0	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	c0004	375	9	0	3	3	1	2	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	c0005	375	1	0	0	1	0	0	copy fasta	UTS2	chr1	7842612	7858065
UTY_chrY_13243385_13485033	1/1	c0001	4335	83	4	16	41	5	15	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0002	4335	32	14	0	18	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0003	4335	3	0	0	3	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0004	4335	3	0	3	0	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0005	4336	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0006	4336	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0007	4335	1	0	0	0	0	1	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0008	4334	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	c0009	4335	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UVRAG_chr11_75810210_76149232	1/0	c0001	2100	87	39	9	21	1	16	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0002	2100	45	24	4	10	1	6	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0003	2100	3	0	0	3	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/1	c0004	2100	3	0	0	2	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0005	2100	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0006	2100	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0007	2100	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0008	2100	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0009	2100	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0010	2100	1	0	1	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	c0011	2100	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVSSA_chr4_1342208_1393049	0/0	c0001	2130	90	11	15	53	0	11	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	1/1	c0002	2130	74	5	16	37	6	8	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0003	2130	61	35	10	12	1	3	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0004	2130	60	6	11	31	0	12	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0005	2130	50	3	21	14	7	5	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0006	2130	11	11	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0007	2130	7	7	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0008	2130	4	0	0	4	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0009	2130	4	0	3	0	0	1	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0010	2130	3	3	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0011	2130	3	0	0	1	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0012	2130	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0013	2130	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0014	2130	2	2	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0015	2130	2	2	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0016	2130	2	1	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0017	2130	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0018	2130	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0019	2130	2	0	0	0	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0020	2130	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0021	2130	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0022	2130	1	0	0	0	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0023	2130	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0024	2130	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0025	2130	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049