JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UVSSA_chr4_1342208_1393049	0/0	c0026	2130	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0027	2130	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0028	2130	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0029	2130	1	0	0	0	0	1	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0030	2130	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0031	2130	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0032	2130	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0033	2130	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0034	2130	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0035	2130	1	0	0	0	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	c0036	2130	1	0	0	0	0	1	copy fasta	UVSSA	chr4	1342208	1393049
UXS1_chr2_106088311_106199301	1/1	c0001	1278	301	67	56	128	12	36	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	c0002	1278	3	3	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXT_chrX_47646796_47664180	1/1	c0001	474	287	78	47	127	11	22	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	c0002	473	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	c0003	473	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	c0004	473	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
VAC14_chr16_70682439_70806158	1/0	c0001	2349	229	52	44	101	6	25	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/1	c0002	2349	59	1	20	22	9	6	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0003	2349	11	11	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0004	2349	6	5	0	0	1	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0005	2349	5	5	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0006	2349	3	0	1	2	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0007	2349	3	2	1	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0008	2349	2	2	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0009	2349	1	0	0	1	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0010	2349	1	1	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0011	2349	1	0	0	0	0	1	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	c0012	2349	1	1	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAMP1_chr12_6457237_6475677	1/0	c0001	357	317	69	67	134	9	37	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/1	c0002	357	129	23	19	66	9	11	copy fasta	VAMP1	chr12	6457237	6475677
VAMP2_chr17_8154149_8167948	1/1	c0001	351	413	89	80	188	14	40	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	c0002	351	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP3_chr1_7766296_7786432	1/1	c0001	303	446	96	74	222	16	36	copy fasta	VAMP3	chr1	7766296	7786432
VAMP4_chr1_171695160_171747065	1/1	c0001	426	365	88	52	179	16	28	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	c0002	426	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP5_chr2_85579431_85598406	1/1	c0001	351	383	91	65	175	13	37	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	c0002	351	50	7	17	14	1	11	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	c0003	351	1	0	0	1	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP7_chrX_155876345_155948769	1/1	c0001	663	181	56	34	73	6	10	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	c0002	663	3	3	0	0	0	0	copy fasta	VAMP7	chrX	155876345	155948769
VAMP8_chr2_85572586_85587031	1/1	c0001	303	226	35	52	100	8	29	copy fasta	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	c0002	303	132	34	12	70	4	12	copy fasta	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	c0003	303	65	23	14	17	2	9	copy fasta	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	c0004	303	1	0	0	1	0	0	copy fasta	VAMP8	chr2	85572586	85587031
VANGL1_chr1_115636970_115703221	1/0	c0001	1575	338	80	40	169	18	30	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/1	c0002	1575	41	6	19	11	0	4	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0003	1575	5	0	5	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0004	1575	5	5	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0005	1575	3	0	0	3	0	0	copy fasta	VANGL1	chr1	115636970	115703221