JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BNC1_chr15_83250884_83289664	1/1	c0001	2985	283	84	58	99	10	30	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0002	2985	4	0	0	4	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0003	2985	3	3	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0004	2985	2	0	0	2	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0005	2985	2	1	1	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0006	2985	2	0	0	2	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0007	2985	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0008	2985	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0009	2985	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0010	2985	1	0	0	1	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0011	2985	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0012	2985	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0013	2985	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	c0014	2985	1	0	1	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC2_chr9_16404503_16875670	1/1	c0001	3300	133	51	17	43	0	20	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0002	3300	10	6	2	1	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0003	3300	7	0	2	5	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0004	3300	3	3	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0005	3300	3	2	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0006	3300	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0007	3300	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0008	3300	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0009	3300	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0010	3300	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0011	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0012	3300	1	0	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0013	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0014	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0015	3300	1	0	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0016	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0017	3300	1	0	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0018	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0019	3300	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0020	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0021	3300	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	c0022	3300	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNIP1_chr5_173139531_173169387	1/1	c0001	687	347	92	68	127	18	40	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	c0002	687	2	2	0	0	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	c0003	687	1	0	0	0	0	1	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	c0004	687	1	0	0	0	0	1	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	c0005	687	1	0	0	1	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP2_chr15_59654146_59694320	1/0	c0001	945	250	79	44	92	7	27	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/1	c0002	945	158	17	30	86	7	17	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	c0003	945	2	0	2	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	c0004	945	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	c0005	945	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP3L_chr8_26378054_26418127	1/1	c0001	660	405	92	76	179	14	42	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	c0002	660	1	0	0	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3_chr10_131962684_131986923	1/1	c0001	585	420	91	67	199	15	46	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	c0002	585	14	3	5	5	1	0	copy fasta	BNIP3	chr10	131962684	131986923