JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VAV2_chr9_133756894_133997324	0/0	c0025	2637	1	0	0	0	0	1	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0026	2637	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0027	2637	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0028	2637	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0029	2637	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0030	2637	1	0	0	0	1	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	c0031	2637	1	0	0	1	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV3_chr1_107566161_107970180	0/1	c0001	2544	81	35	18	15	4	8	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	1/0	c0002	2544	46	13	12	14	1	5	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0003	2544	29	2	11	9	1	6	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0004	2544	16	0	4	9	1	2	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0005	2544	10	0	1	7	1	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0006	2544	7	0	0	4	0	3	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0007	2544	3	3	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0008	2544	3	3	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0009	2544	3	0	0	0	0	3	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0010	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0011	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0012	2544	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0013	2544	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0014	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0015	2529	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0016	2544	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0017	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0018	2544	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0019	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0020	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	c0021	2544	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAX1_chr10_117128290_117143270	1/1	c0001	1005	443	83	81	211	18	48	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	c0002	1005	8	8	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	c0003	1014	3	3	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	c0004	1005	1	0	1	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	c0005	1005	1	0	0	1	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX2_chr2_70895576_70938446	1/1	c0001	873	308	59	67	143	9	28	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0002	873	39	10	2	19	0	8	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0003	873	35	10	5	15	1	4	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0004	873	32	11	3	17	0	1	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0005	873	6	5	1	0	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0006	873	2	0	0	2	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0007	873	1	0	0	1	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0008	873	1	1	0	0	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0009	873	1	0	0	0	0	1	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	c0010	873	1	0	0	1	0	0	copy fasta	VAX2	chr2	70895576	70938446
VBP1_chrX_155211460_155244841	1/1	c0001	594	247	66	44	98	7	30	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	c0002	594	1	0	1	0	0	0	copy fasta	VBP1	chrX	155211460	155244841
VCAM1_chr1_100714742_100744045	0/0	c0001	2220	307	35	59	157	13	43	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	1/0	c0002	2220	62	16	1	42	0	2	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/1	c0003	2220	47	23	17	1	3	2	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0004	2220	6	6	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0005	2220	4	4	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045