JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCAM1_chr1_100714742_100744045	0/0	c0006	2220	3	3	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0007	2220	2	2	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0008	2220	2	2	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0009	2220	2	1	1	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0010	2220	2	0	2	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0011	2220	2	2	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0012	2220	1	0	0	0	0	1	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0013	2220	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0014	2220	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0015	2220	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0016	2220	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0017	2220	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	c0018	2220	1	0	0	1	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAN_chr5_83466744_83587302	0/0	c0001	10191	75	15	14	34	4	8	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0002	10191	16	0	7	5	1	3	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0003	10191	16	0	0	15	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0004	10191	14	1	0	9	0	4	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/1	c0005	10191	14	1	0	8	0	4	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0006	10191	12	2	5	2	1	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0007	10191	10	0	0	10	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0008	10191	8	0	3	5	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0009	10191	8	0	0	8	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0010	10191	7	1	4	1	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0011	10191	7	5	2	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0012	10191	6	6	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0013	10191	6	1	0	2	0	3	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0014	10191	6	5	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0015	10191	6	0	0	6	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0016	10191	6	0	3	0	2	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0017	10191	5	0	0	5	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0018	10191	4	0	0	4	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0019	10191	4	0	0	4	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0020	10191	4	1	0	1	0	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0021	10191	3	2	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0022	10191	3	3	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0023	10191	3	2	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0024	10191	3	3	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0025	10191	3	1	2	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0026	10191	3	0	0	3	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0027	10191	3	0	0	3	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0028	10191	3	3	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0029	10191	3	0	2	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0030	10191	3	0	0	1	0	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0031	10191	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0032	10191	2	1	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0033	10191	2	1	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0034	10191	2	0	0	2	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0035	10191	2	0	0	0	2	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0036	10191	2	0	0	1	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0037	10191	2	0	0	2	0	0	copy fasta	VCAN	chr5	83466744	83587302