JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCAN_chr5_83466744_83587302	0/0	c0038	10191	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0039	10191	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0040	10191	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0041	10191	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0042	10191	2	0	0	2	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0043	10191	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0044	10191	2	0	0	2	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	1/0	c0045	10191	2	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0046	10191	1	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0047	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0048	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0049	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0050	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0051	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0052	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0053	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0054	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0055	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0056	10191	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0057	10191	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0058	10191	1	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0059	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0060	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0061	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0062	10191	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0063	10191	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0064	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0065	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0066	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0067	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0068	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0069	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0070	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0071	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0072	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0073	10191	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0074	10191	1	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0075	10204	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0076	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0077	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0078	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0079	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0080	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0081	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0082	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0083	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0084	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0085	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0086	10191	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	c0087	10191	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302