JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCPKMT_chr14_50103637_50121572	0/0	c0003	690	16	16	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	c0004	690	4	0	0	4	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	c0005	690	3	0	0	3	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	c0006	690	3	3	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	c0007	690	1	1	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	c0008	678	1	0	0	1	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCP_chr9_35051064_35077625	1/1	c0001	2421	405	89	73	185	12	44	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0002	2421	2	2	0	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0003	2421	1	0	0	1	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0004	2421	1	0	0	1	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0005	2421	1	0	0	0	0	1	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0006	2421	1	0	1	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0007	2421	1	0	0	1	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0008	2421	1	0	0	0	0	1	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	c0009	2421	1	1	0	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCX2_chrX_8164944_8176267	0/0	c0001	420	22	10	1	11	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0002	420	22	1	3	11	2	5	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0003	420	14	5	0	8	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	1/0	c0004	420	11	1	6	1	1	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0005	420	6	6	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0006	420	6	1	2	0	0	3	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0007	480	3	2	0	0	1	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0008	420	2	2	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0009	420	2	1	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0010	420	2	2	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0011	420	2	0	2	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0012	420	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0013	420	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0014	420	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0015	420	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0016	418	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0017	420	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0018	420	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0019	419	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0020	420	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0021	421	1	0	0	0	1	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0022	420	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0023	419	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0024	418	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0025	420	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0026	420	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0027	480	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0028	420	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0029	422	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0030	420	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0031	418	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0032	420	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0033	420	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	c0034	420	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX3A_chrX_6528618_6540118	0/0	c0001	621	19	5	2	7	1	4	copy fasta	VCX3A	chrX	6528618	6540118