JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCX3A_chrX_6528618_6540118	0/0	c0002	621	8	8	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0003	561	7	7	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0004	651	5	5	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	1/0	c0005	561	4	1	0	0	2	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0006	591	3	3	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0007	621	3	0	0	3	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0008	561	2	2	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0009	621	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0010	561	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0011	651	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0012	621	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0013	651	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0014	621	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0015	561	1	0	0	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0016	501	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0017	621	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0018	620	1	0	0	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0019	681	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0020	561	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0021	621	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0022	651	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0023	711	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/1	c0024	651	1	0	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0025	741	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0026	591	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0027	771	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0028	562	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0029	891	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0030	561	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	c0031	621	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3B_chrX_8459830_8471510	0/0	c0001	591	43	1	5	31	3	3	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0002	741	29	2	5	9	4	9	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0003	711	17	0	0	16	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0004	561	16	0	12	4	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0005	711	7	6	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0006	711	6	6	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0007	651	6	0	6	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0008	681	6	0	4	0	1	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0009	561	5	2	3	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0010	711	5	0	0	5	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0011	591	5	0	3	0	0	2	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0012	681	4	1	3	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0013	591	4	0	0	4	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0014	711	4	4	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0015	711	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0016	651	3	0	0	3	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0017	711	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0018	651	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0019	621	3	2	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0020	651	3	1	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510