JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BNIP3_chr10_131962684_131986923	0/0	c0003	585	2	0	0	2	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	c0004	585	1	1	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	c0005	585	1	1	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP5_chr6_36310761_36341888	1/1	c0001	1959	250	56	26	130	8	28	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0002	1959	109	35	26	27	4	17	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0003	1959	29	1	15	13	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0004	1959	6	0	1	4	0	1	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0005	1959	4	0	2	0	2	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0006	1959	3	0	1	1	0	1	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0007	1959	2	1	0	0	0	1	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0008	1959	2	0	1	0	1	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0009	1959	2	0	0	2	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0010	1959	1	0	1	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0011	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0012	1959	1	0	1	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0013	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0014	1959	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0015	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0016	1959	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0017	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0018	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0019	1959	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0020	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0021	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0022	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0023	1959	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0024	1959	1	0	0	0	1	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0025	1959	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	c0026	1959	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIPL_chr1_151031586_151052720	1/1	c0001	1074	309	74	47	131	16	39	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0002	1074	21	15	6	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0003	1074	9	0	7	0	0	2	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0004	1074	5	5	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0005	1074	4	0	0	2	0	2	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0006	1074	3	3	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0007	1074	2	0	1	0	0	1	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0008	1074	2	0	2	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0009	1074	2	0	1	0	1	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0010	1074	1	0	0	1	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0011	1074	1	0	0	0	1	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0012	1074	1	1	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0013	1074	1	0	0	1	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	c0014	1074	1	0	0	1	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BOC_chr3_113206557_113292459	1/0	c0001	3348	105	13	23	44	7	17	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0002	3348	103	9	21	60	1	12	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0003	3348	25	0	6	13	1	5	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0004	3348	21	12	2	6	1	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/1	c0005	3348	20	4	0	15	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0006	3348	15	12	3	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0007	3348	15	14	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459