JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCX3B_chrX_8459830_8471510	0/0	c0071	501	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0072	621	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0073	561	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0074	441	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0075	621	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0076	561	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0077	681	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0078	621	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0079	681	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0080	741	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0081	651	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0082	591	1	0	0	0	1	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0083	712	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0084	801	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0085	741	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0086	741	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0087	561	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0088	591	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0089	711	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0090	831	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0091	604	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0092	679	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0093	591	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0094	591	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0095	561	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0096	562	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0097	592	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0098	591	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0099	741	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0100	740	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	c0101	557	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX_chrX_7838171_7849143	1/0	c0001	621	56	9	3	37	1	5	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0002	621	30	8	5	12	1	4	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0003	561	22	1	1	19	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0004	501	21	3	9	2	2	5	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0005	621	15	0	14	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0006	621	11	1	1	6	2	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0007	621	11	1	1	2	3	4	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0008	561	9	0	8	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0009	621	8	8	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0010	561	8	2	0	2	2	2	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0011	561	7	0	0	7	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0012	621	6	0	0	6	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0013	621	5	5	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0014	651	4	4	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0015	621	3	0	0	3	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0016	621	3	2	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0017	741	3	0	0	3	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0018	741	3	2	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0019	561	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143