JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCX_chrX_7838171_7849143	0/0	c0020	621	2	0	2	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0021	561	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0022	651	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0023	621	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0024	621	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0025	561	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0026	621	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0027	591	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0028	561	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0029	651	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0030	561	2	0	2	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0031	621	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0032	591	2	0	0	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0033	441	2	0	2	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0034	621	2	0	2	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0035	531	2	0	1	0	1	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0036	623	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0037	621	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0038	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0039	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0040	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0041	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0042	741	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0043	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0044	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0045	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0046	741	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0047	561	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0048	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0049	621	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0050	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0051	651	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0052	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0053	591	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0054	531	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0055	801	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0056	501	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0057	501	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0058	561	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0059	620	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0060	621	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0061	712	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0062	501	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0063	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0064	711	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0065	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0066	621	1	0	0	0	1	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0067	561	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0068	651	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0069	591	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143