JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VILL_chr3_37985786_38012185	0/0	c0004	2571	20	17	3	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0005	2571	5	5	0	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0006	2571	5	0	0	0	0	5	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0007	2571	4	3	1	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0008	2571	4	4	0	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0009	2574	3	0	2	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0010	2571	2	0	2	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0011	2571	2	0	0	2	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0012	2571	1	1	0	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0013	2571	1	1	0	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0014	2571	1	0	0	0	0	1	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0015	2571	1	1	0	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0016	2571	1	0	1	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0017	2571	1	0	0	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0018	2571	1	0	0	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0019	2574	1	0	0	1	0	0	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0020	2571	1	0	0	0	0	1	copy fasta	VILL	chr3	37985786	38012185
VILL_chr3_37985786_38012185	0/0	c0021	2571	1	0	1	0	0	0	copy fasta	VILL	chr3	37985786	38012185
VIM_chr10_17223241_17242593	1/1	c0001	1401	377	75	83	160	17	40	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0002	1401	20	17	0	1	1	1	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0003	1401	4	3	1	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0004	1401	2	2	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0005	1401	1	0	1	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0006	1401	1	0	0	1	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0007	1401	1	1	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0008	1401	1	0	1	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	c0009	1401	1	0	0	0	0	1	copy fasta	VIM	chr10	17223241	17242593
VIPAS39_chr14_77421675_77462601	1/1	c0001	1482	209	72	52	36	13	34	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0002	1482	14	13	1	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0003	1482	7	0	0	6	1	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0004	1483	4	2	1	0	0	1	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0005	1482	2	0	0	2	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0006	1482	2	0	0	2	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0007	1482	1	0	0	1	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0008	1482	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0011	1482	1	0	0	1	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	c0012	1482	1	0	0	0	0	1	copy fasta	VIPAS39	chr14	77421675	77462601
VIPR1_chr3_42497643_42542568	1/1	c0001	1374	195	35	49	65	16	28	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0002	1374	161	29	15	103	2	12	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0003	1374	15	15	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0004	1374	8	5	3	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0005	1374	6	0	0	6	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0006	1374	6	0	0	6	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0007	1374	5	5	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0008	1374	5	4	1	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0009	1374	4	3	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0010	1374	2	2	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0011	1374	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568