JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VIPR1_chr3_42497643_42542568	0/0	c0012	1374	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0013	1374	1	0	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0014	1374	1	0	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	c0015	1374	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR2_chr7_159023175_159149867	0/0	c0001	1317	109	14	33	46	3	13	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0002	1317	79	11	20	39	1	8	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/1	c0003	1317	41	2	7	25	1	5	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0004	1317	30	16	3	8	1	2	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	1/0	c0005	1317	28	20	5	0	0	2	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0006	1317	7	3	0	3	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0007	1317	4	0	0	4	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0008	1317	4	4	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0009	1317	3	3	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0010	1317	3	3	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0011	1317	3	3	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0012	1317	2	2	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0013	1317	2	2	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0014	1317	2	0	0	2	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0015	1317	2	2	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0016	1317	2	2	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0017	1317	2	0	2	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0018	1317	2	1	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0019	1317	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0020	1317	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0021	1317	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0022	1317	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0023	1317	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0024	1317	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0025	1317	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0026	1317	1	0	0	0	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0027	1317	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0028	1317	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	c0029	1317	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIP_chr6_152745797_152764760	1/1	c0001	513	421	89	78	190	18	44	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	c0002	513	6	4	2	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	c0003	513	2	2	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	c0004	513	1	0	0	1	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	c0005	513	1	0	0	1	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	c0006	513	1	1	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIRMA_chr8_94482689_94558469	0/0	c0001	5439	100	19	21	40	2	18	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/1	c0002	5439	97	6	21	52	6	11	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	1/0	c0003	5439	86	21	15	31	4	14	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0004	5439	12	12	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0005	5439	11	9	2	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0006	5439	10	3	2	0	4	1	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0007	5439	7	0	0	7	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0008	5439	4	3	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0009	5439	2	2	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0010	5439	2	1	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	c0011	5439	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469