JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BOC_chr3_113206557_113292459	0/0	c0008	3348	14	0	0	11	0	3	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0009	3348	8	8	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0010	3348	8	0	4	3	0	1	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0011	3348	8	0	0	8	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0012	3348	6	6	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0013	3348	5	5	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0014	3348	3	3	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0015	3348	3	2	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0016	3348	2	2	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0017	3348	2	2	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0018	3348	2	1	0	0	1	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0019	3348	2	2	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0020	3348	2	0	0	2	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0021	3348	2	0	0	1	1	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0022	3348	2	0	2	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0023	3348	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0024	3348	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0025	3348	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0026	3348	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0027	3348	1	1	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0028	3348	1	1	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0029	3348	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0030	3348	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0031	3348	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0032	3348	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0033	3348	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0034	3348	1	1	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	c0035	3348	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOD1L1_chr4_13563738_13632725	0/0	c0001	9156	97	9	32	41	5	10	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	1/0	c0002	9156	63	35	8	10	4	5	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0003	9156	20	0	13	0	2	5	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/1	c0004	9156	17	0	0	11	1	4	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0005	9156	10	10	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0006	9156	5	4	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0007	9159	5	4	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0008	9156	5	5	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0009	9156	3	3	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0010	9156	2	0	2	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0011	9156	2	0	1	0	1	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0012	9156	2	2	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0013	9156	2	0	0	0	0	2	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0014	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0015	9159	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0016	9156	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0017	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0018	9156	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0019	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0020	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0021	9156	1	0	0	0	1	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0022	9156	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725