JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VN1R4_chr19_53261676_53272723	0/1	c0002	906	134	13	25	77	3	15	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0003	906	80	22	20	21	4	13	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0004	906	8	8	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0005	906	7	0	0	7	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0006	906	5	5	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0007	906	4	3	1	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0008	906	3	3	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0009	906	3	3	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0010	906	2	0	0	2	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0011	906	2	0	0	2	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0012	906	2	2	0	0	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	c0013	906	1	0	0	0	0	1	copy fasta	VN1R4	chr19	53261676	53272723
VNN1_chr6_132675849_132719055	0/0	c0001	1542	174	44	31	78	2	19	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	1/1	c0002	1542	104	5	29	49	9	10	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0003	1542	82	1	21	50	4	6	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0004	1542	22	15	1	1	1	4	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0005	1542	6	6	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0006	1542	3	3	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0007	1542	3	3	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0008	1542	3	3	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0009	1542	3	0	0	3	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0010	1542	2	0	1	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0011	1542	2	0	2	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0012	1542	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0013	1542	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0014	1542	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0015	1542	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0016	1542	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0017	1542	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0018	1542	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0019	1542	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0020	1542	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0021	1542	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0022	1542	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0023	1542	1	0	1	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0024	1542	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	c0025	1542	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN2_chr6_132738870_132762904	0/1	c0001	1563	260	49	44	125	15	26	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0002	1563	134	24	32	57	3	18	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0003	1563	10	10	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0004	1563	9	9	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0005	1563	5	0	2	3	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0006	1563	2	0	0	2	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0007	1563	2	0	2	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0008	1563	2	2	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0009	1563	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0010	1563	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0011	1563	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0012	1563	1	0	0	0	0	1	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	1/0	c0013	1563	1	0	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904