JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VNN2_chr6_132738870_132762904	0/0	c0014	1563	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0015	1563	1	0	0	0	0	1	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0016	1563	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0017	1563	1	0	0	0	0	1	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0018	1563	1	0	0	0	0	1	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0019	1563	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	c0020	1563	1	1	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VOPP1_chr7_55465613_55577502	1/1	c0001	519	212	66	25	81	11	27	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	c0002	519	96	13	22	49	3	9	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	c0003	519	7	7	0	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	c0004	519	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	c0005	519	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	c0006	519	1	0	1	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VPREB1_chr22_22239786_22250515	1/1	c0001	438	363	64	60	194	8	35	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	c0002	438	52	32	10	0	2	8	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	c0003	438	25	1	5	10	4	5	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	c0004	438	1	0	1	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	c0005	438	1	0	1	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	c0006	438	1	0	1	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	c0007	438	1	1	0	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB3_chr22_23747743_23759425	1/1	c0001	372	405	75	77	190	15	46	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0002	372	21	19	2	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0003	372	2	2	0	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0004	372	1	0	0	1	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0005	372	1	0	0	0	1	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0006	372	1	0	1	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0007	372	1	1	0	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0008	372	1	1	0	0	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	c0009	372	1	0	0	1	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPS11_chr11_119062818_119086972	0/0	c0001	2826	128	16	18	65	8	21	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/1	c0002	2826	84	20	25	24	3	11	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	1/0	c0003	2826	52	7	16	20	5	3	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0004	2826	21	13	1	6	0	1	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0005	2826	18	15	2	0	0	1	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0006	2826	7	6	1	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0007	2826	5	0	0	5	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0008	2826	4	4	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0009	2826	4	4	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0010	2826	4	0	0	4	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0011	2826	3	2	1	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0012	2826	3	0	0	0	0	3	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0013	2826	2	0	2	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0014	2826	2	0	0	2	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0015	2826	2	0	0	2	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0016	2826	1	0	0	0	0	1	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0017	2826	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0018	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0019	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0020	2826	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0021	2826	1	0	1	0	0	0	copy fasta	VPS11	chr11	119062818	119086972