JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS11_chr11_119062818_119086972	0/0	c0022	2826	1	0	1	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0023	2826	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0024	2826	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0025	2826	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0026	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0027	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0028	2826	1	0	0	0	0	1	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0029	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0030	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0031	2826	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	c0032	2826	1	1	0	0	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS13A_chr9_77172534_77426537	1/0	c0001	9525	134	34	16	68	2	13	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0002	9525	62	0	19	33	2	8	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/1	c0003	9525	38	3	4	25	1	4	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0004	9525	13	3	1	9	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0005	9525	12	2	4	5	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0006	9525	10	7	3	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0007	9525	7	0	4	0	0	3	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0008	9525	5	4	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0009	9525	5	5	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0010	9525	5	0	0	5	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0011	9525	4	0	0	4	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0012	9525	3	0	0	3	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0013	9525	3	3	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0014	9525	3	1	2	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0015	9525	2	0	1	0	1	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0016	9525	2	2	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0017	9525	2	0	0	0	0	2	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0018	9525	2	0	0	0	1	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0019	9525	2	0	1	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0020	9525	2	0	2	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0021	9525	2	2	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0022	9525	2	2	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0023	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0024	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0025	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0026	9525	1	0	0	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0027	9525	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0028	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0029	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0030	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0031	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0032	9525	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0033	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0034	9525	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0035	9525	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0036	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0037	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0038	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0039	9525	1	0	0	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537