JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS13A_chr9_77172534_77426537	0/0	c0040	9525	1	0	0	0	1	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0041	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0042	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0043	9525	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0044	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0045	9525	1	0	0	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0046	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0047	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0048	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0049	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	c0050	9525	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13B_chr8_99008274_99882580	1/1	c0001	11994	42	9	12	17	2	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0002	11994	34	0	13	18	3	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0003	11994	15	5	2	6	2	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0004	11994	4	4	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0005	11994	4	4	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0006	11994	3	0	2	0	0	1	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0007	11994	2	2	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0008	11994	2	2	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0009	11994	2	2	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0010	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0011	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0012	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0013	11994	1	0	0	0	0	1	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0014	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0015	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0016	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0017	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0018	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0019	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0020	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0021	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0022	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0023	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0024	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0025	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0026	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0027	11994	1	0	0	0	1	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0028	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0029	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0030	11994	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0031	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0032	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0033	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0034	11994	1	1	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	c0035	11994	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13C_chr15_61847389_62065447	0/0	c0001	11262	115	29	21	50	4	11	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/1	c0002	11262	53	4	17	23	4	4	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	c0003	11262	50	0	5	38	0	7	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	c0004	11262	19	0	3	15	0	1	copy fasta	VPS13C	chr15	61847389	62065447