JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS13C_chr15_61847389_62065447	0/0	c0055	11262	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	c0056	11262	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	c0057	11262	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	c0058	11262	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13D_chr1_12225030_12517047	0/1	c0001	13167	59	14	13	22	0	9	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	1/0	c0002	13167	22	3	2	12	0	4	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0003	13167	12	3	3	6	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0004	13167	9	1	2	5	0	1	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0005	13167	6	4	0	0	0	2	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0006	13167	6	0	3	1	0	2	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0007	13167	5	4	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0008	13167	5	0	3	1	0	1	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0009	13167	3	2	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0010	13167	2	2	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0011	13167	2	2	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0012	13167	2	1	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0013	13167	2	2	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0014	13167	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0015	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0016	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0017	13167	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0018	13167	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0019	13167	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0020	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0021	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0022	13167	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0023	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0024	13167	1	0	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0025	13167	1	0	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0026	13167	1	0	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0027	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0028	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0029	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0030	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0031	13167	1	1	0	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	c0032	13167	1	0	0	0	0	1	copy fasta	VPS13D	chr1	12225030	12517047
VPS16_chr20_2835745_2871732	1/1	c0001	2520	280	69	44	132	10	23	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0002	2520	62	1	6	39	2	14	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0003	2520	27	1	12	13	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0004	2520	14	11	0	0	0	3	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0005	2520	10	1	1	7	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0006	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0007	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0008	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0009	2520	1	1	0	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0010	2520	1	0	1	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0011	2520	1	1	0	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0012	2520	1	1	0	0	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0013	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0014	2520	1	0	0	0	0	1	copy fasta	VPS16	chr20	2835745	2871732