JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS16_chr20_2835745_2871732	0/0	c0015	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0016	2520	1	0	0	0	1	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0017	2520	1	0	0	0	1	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0018	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0019	2520	1	0	0	1	0	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	c0020	2520	1	0	0	0	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS18_chr15_40889450_40908975	1/1	c0001	2922	314	65	54	148	12	33	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0002	2922	42	4	8	21	2	7	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0003	2922	17	14	0	1	0	2	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0004	2922	7	0	0	7	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0005	2922	5	5	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0006	2922	3	0	3	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0007	2922	3	3	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0008	2922	2	0	0	2	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0009	2922	2	0	0	2	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0010	2922	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0011	2922	1	0	0	1	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0012	2922	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0013	2922	1	0	1	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0014	2922	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0015	2922	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0016	2922	1	0	0	1	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0017	2922	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0018	2922	1	0	0	1	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0019	2922	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	c0020	2922	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS25_chr17_42768449_42784599	1/1	c0001	531	217	51	53	71	14	26	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	c0002	531	36	24	1	6	0	5	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	c0003	531	34	9	4	15	0	6	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	c0004	531	6	6	0	0	0	0	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	c0005	531	1	0	0	0	0	1	copy fasta	VPS25	chr17	42768449	42784599
VPS26A_chr10_69119178_69179412	1/1	c0001	984	284	61	34	143	10	34	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	c0002	984	38	13	10	5	4	6	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	c0003	984	11	10	1	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	c0004	984	2	1	1	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	c0005	984	1	1	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26B_chr11_134219671_134252788	1/1	c0001	1011	412	87	79	187	14	43	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	c0002	1011	11	7	1	0	2	1	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	c0003	1011	2	2	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	c0004	1011	2	2	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	c0005	1011	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	c0007	1030	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26C_chr21_37218422_37272334	1/1	c0001	894	389	94	75	161	16	41	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	c0002	895	5	0	1	4	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	c0003	894	1	0	0	1	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	c0004	894	1	0	0	0	0	1	copy fasta	VPS26C	chr21	37218422	37272334
VPS28_chr8_144418617_144433548	0/1	c0001	666	389	78	74	182	14	40	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	1/0	c0002	666	9	8	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	c0003	666	7	7	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548