JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS28_chr8_144418617_144433548	0/0	c0004	666	2	2	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	c0005	666	1	1	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS29_chr12_110486083_110507111	1/1	c0001	549	309	87	68	104	14	34	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	c0002	549	1	1	0	0	0	0	copy fasta	VPS29	chr12	110486083	110507111
VPS33A_chr12_122224564_122271494	1/1	c0001	1791	298	50	73	124	12	37	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0002	1791	19	19	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0003	1791	11	11	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0004	1791	10	0	0	10	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0005	1791	4	1	1	0	0	2	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0006	1791	2	2	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0007	1791	1	0	0	0	0	1	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	c0008	1791	1	1	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33B_chr15_90993673_91027594	0/0	c0001	1854	243	35	30	148	2	28	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	1/1	c0002	1854	50	4	21	0	7	16	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0003	1854	26	8	8	6	0	4	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0004	1854	12	11	1	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0005	1854	10	10	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0006	1854	9	7	2	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0007	1854	6	6	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0008	1854	4	4	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0009	1854	2	2	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0010	1854	2	0	2	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0011	1854	2	2	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0012	1854	2	2	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0013	1854	1	0	0	0	1	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0014	1854	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0015	1854	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0016	1854	1	1	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0017	1854	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	c0018	1854	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS35L_chr16_19550703_19706163	1/0	c0001	2892	142	36	25	56	7	17	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/1	c0002	2892	99	25	15	46	1	11	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0003	2892	11	7	1	3	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0004	2892	7	5	2	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0005	2892	3	3	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0006	2892	3	3	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0007	2892	3	1	2	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0008	2892	2	2	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0009	2892	2	2	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0010	2892	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0011	2892	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0012	2892	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0013	2892	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0014	2892	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0015	2892	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0016	2892	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0017	2892	1	0	1	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0018	2892	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0019	2892	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	c0020	2892	1	0	0	1	0	0	copy fasta	VPS35L	chr16	19550703	19706163