JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BOD1L1_chr4_13563738_13632725	0/0	c0023	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0024	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0025	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0026	9156	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0027	9156	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0028	9156	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0029	9156	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0030	9159	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0031	9156	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0032	9156	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0033	9156	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0034	9156	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0035	9156	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0036	9156	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0037	9156	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	c0038	9156	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L2_chr18_57142087_57155410	0/0	c0001	519	249	40	37	137	7	28	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	1/1	c0002	519	170	38	29	82	8	11	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0003	519	24	1	8	11	1	3	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0004	519	10	7	2	0	0	1	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0005	519	4	0	1	3	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0006	519	2	0	0	2	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0007	519	1	0	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0008	519	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0009	519	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0010	519	1	0	0	1	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0011	519	1	0	0	0	0	1	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0012	519	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0013	519	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0014	519	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	c0015	519	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1_chr5_173602145_173621650	1/1	c0001	558	412	91	80	178	18	43	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	c0002	558	3	3	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	c0003	558	1	0	0	0	0	1	copy fasta	BOD1	chr5	173602145	173621650
BOK_chr2_241553745_241579131	1/1	c0001	639	409	77	76	192	14	48	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0002	639	14	13	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0003	639	3	0	1	0	2	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0004	639	2	0	0	2	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0005	639	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0006	639	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0007	639	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0008	639	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0009	639	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	c0010	639	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOLA1_chr1_149894568_149905795	1/1	c0001	414	346	92	63	125	14	50	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	c0002	414	7	0	7	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	c0003	414	3	3	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	c0004	414	2	2	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	c0005	414	1	1	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	c0006	414	1	0	0	1	0	0	copy fasta	BOLA1	chr1	149894568	149905795