JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS35L_chr16_19550703_19706163	0/0	c0021	2892	1	0	0	0	0	1	copy fasta	VPS35L	chr16	19550703	19706163
VPS35_chr16_46651132_46694178	0/1	c0001	2391	202	59	50	50	10	32	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	1/0	c0002	2391	11	9	1	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	c0003	2391	2	0	0	2	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	c0004	2391	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	c0005	2391	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	c0006	2391	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	c0007	2391	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	c0008	2391	1	0	1	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS36_chr13_52407606_52455634	1/1	c0001	1161	331	79	70	134	12	34	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	c0002	1161	5	0	0	5	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	c0003	1161	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	c0004	1161	1	0	0	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS37A_chr8_17241958_17303024	1/1	c0001	1194	229	61	43	76	15	32	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0002	1194	139	29	20	77	1	12	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0003	1194	5	0	0	5	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0004	1194	4	1	1	1	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0005	1194	2	0	0	1	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0006	1194	2	1	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0007	1194	1	0	0	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	c0009	1194	1	0	0	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37B_chr12_122860330_122901124	1/1	c0001	858	260	80	40	94	10	34	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	c0002	858	2	0	0	0	0	2	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	c0003	858	2	0	0	0	0	2	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	c0004	858	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	c0005	858	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37C_chr11_61125257_61166426	0/1	c0001	1068	162	79	23	25	12	22	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	1/0	c0002	1068	27	4	19	1	1	1	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0003	1068	9	0	3	0	3	3	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0004	1068	6	0	4	0	0	2	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0005	1068	3	0	3	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0006	1068	2	2	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0007	1068	1	1	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0008	1068	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	c0009	1068	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37D_chr7_73662831_73677110	1/1	c0001	756	372	89	70	152	18	41	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	c0002	756	2	2	0	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	c0003	756	2	0	0	2	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	c0004	756	1	1	0	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	c0005	756	1	0	1	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	c0006	756	1	0	0	0	0	1	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	c0007	756	1	0	1	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS39_chr15_42153701_42213304	1/1	c0001	2628	165	20	18	98	6	21	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0002	2628	99	41	21	23	4	10	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0003	2628	51	18	16	14	0	3	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0004	2628	6	6	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0005	2628	2	2	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0006	2628	2	0	1	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0007	2628	2	0	0	2	0	0	copy fasta	VPS39	chr15	42153701	42213304