JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS39_chr15_42153701_42213304	0/0	c0008	2628	2	0	0	2	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0009	2628	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0010	2628	1	1	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0011	2628	1	1	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0012	2628	1	0	0	0	0	1	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0013	2628	1	1	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0014	2628	1	0	0	0	0	1	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	c0015	2628	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS41_chr7_38717974_38914191	1/1	c0001	2565	148	30	29	58	9	20	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0002	2565	86	19	19	36	4	8	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0003	2565	21	20	1	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0004	2565	8	0	8	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0005	2565	3	1	1	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0006	2565	2	2	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0007	2565	2	2	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0008	2565	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0009	2565	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0010	2565	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0011	2565	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0012	2565	1	0	0	0	1	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0013	2565	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0014	2565	1	0	0	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	c0015	2565	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS45_chr1_150062776_150150329	1/1	c0001	1713	161	75	28	28	8	20	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	c0002	1713	13	13	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	c0003	1713	1	1	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	c0004	1713	1	1	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS4A_chr16_69306350_69331939	1/0	c0001	1314	263	52	60	115	10	25	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/1	c0002	1314	77	32	10	13	5	16	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	c0003	1314	17	6	2	7	1	1	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	c0004	1314	6	5	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	c0005	1314	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	c0007	1314	1	0	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4B_chr18_63384190_63427476	1/1	c0001	1335	371	81	66	164	15	43	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	c0002	1335	6	5	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	c0003	1335	4	0	0	4	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	c0004	1335	3	2	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	c0005	1335	1	0	0	0	1	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	c0006	1335	1	0	0	0	0	1	copy fasta	VPS4B	chr18	63384190	63427476
VPS50_chr7_93227366_93366123	0/1	c0001	2895	113	37	13	58	0	4	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0002	2895	97	30	16	35	1	15	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	1/0	c0003	2895	78	1	17	42	2	15	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0004	2895	8	0	0	8	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0005	2895	5	1	4	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0006	2895	3	3	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0007	2895	2	2	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0008	2895	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0009	2895	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0010	2895	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123