JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS50_chr7_93227366_93366123	0/0	c0011	2895	1	0	0	0	0	1	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0012	2895	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0013	2895	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0014	2895	1	0	0	0	1	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0015	2895	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0016	2895	1	0	0	0	0	1	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	c0017	2895	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS51_chr11_65091214_65116862	1/1	c0001	2349	330	95	60	125	12	36	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0002	2349	12	0	3	6	1	2	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0003	2349	2	0	0	2	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0004	2349	1	0	0	1	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0005	2349	1	0	0	1	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0006	2349	1	0	0	1	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0007	2349	1	0	1	0	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0008	2349	1	0	0	0	1	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	c0009	2349	1	1	0	0	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS52_chr6_33245278_33276876	0/1	c0001	2172	158	36	35	62	7	17	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0002	2172	136	44	17	59	5	11	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0003	2172	11	9	2	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0004	2172	6	6	0	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0005	2172	5	1	0	4	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0006	2172	2	0	0	2	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0007	2172	1	0	0	1	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0008	2172	1	0	1	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0009	2172	1	0	0	1	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0011	2172	1	0	1	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0012	2172	1	0	0	0	0	1	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	c0013	2172	1	0	0	0	0	1	copy fasta	VPS52	chr6	33245278	33276876
VPS53_chr17_503668_719839	0/0	c0001	2499	65	26	13	21	0	5	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	1/1	c0002	2499	57	6	14	25	7	3	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0003	2499	35	0	8	21	1	5	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0004	2499	30	3	1	22	3	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0005	2499	10	0	0	9	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0006	2499	10	0	3	1	3	3	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0007	2499	9	0	7	0	2	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0008	2499	6	0	0	5	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0009	2499	3	0	0	3	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0010	2499	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0011	2499	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0012	2499	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0013	2499	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0014	2499	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0015	2499	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	c0016	2499	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS54_chr2_63887150_64024428	1/1	c0001	2934	201	43	59	60	13	24	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0002	2934	43	6	13	13	3	8	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0003	2934	24	12	2	2	2	6	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0004	2934	14	14	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0005	2934	11	11	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428