JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VPS54_chr2_63887150_64024428	0/0	c0006	2934	5	5	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0007	2934	3	0	0	3	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0008	2934	1	0	0	1	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0009	2934	1	0	0	1	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	c0010	2934	1	1	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS72_chr1_151171304_151195197	1/1	c0001	1095	392	80	67	185	16	42	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0002	1095	7	7	0	0	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0003	1095	4	1	0	0	1	2	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0004	1095	1	1	0	0	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0005	1095	1	1	0	0	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0006	1095	1	0	0	0	1	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	c0008	1095	1	0	1	0	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS8_chr3_184807166_185057604	0/0	c0001	4287	88	19	19	35	3	12	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0002	4287	70	2	13	42	3	10	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0003	4287	17	10	1	5	0	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0004	4287	14	2	5	7	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0005	4287	10	10	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0006	4287	9	6	2	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0007	4287	5	5	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0008	4287	5	3	2	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0009	4287	5	0	2	1	1	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0010	4287	4	0	0	4	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0011	4287	4	1	2	0	1	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0012	4287	4	3	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/1	c0013	4287	3	0	1	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0014	4287	2	0	0	2	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0015	4287	2	2	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0016	4287	2	2	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0017	4287	2	0	2	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0018	4287	2	2	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0019	4287	2	1	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0020	4287	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	1/0	c0021	4287	1	0	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0022	4287	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0023	4287	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0024	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0025	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0026	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0027	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0028	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0029	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0030	4287	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0031	4287	1	0	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0032	4287	1	0	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0033	4287	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0034	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0035	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0036	4287	1	0	0	0	1	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	c0037	4287	1	1	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604