JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VRK3_chr19_49971468_50030372	0/0	c0006	1425	1	0	1	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0008	1425	1	1	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0009	1425	1	0	0	0	0	1	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0010	1425	1	0	0	1	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRTN_chr14_74343471_74365008	1/1	c0001	2109	348	53	55	177	17	44	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0002	2109	25	20	5	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0003	2109	18	1	9	6	1	1	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0004	2109	6	0	0	6	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0005	2109	4	4	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0006	2109	4	0	3	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0007	2109	3	3	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0008	2109	3	3	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0009	2109	2	0	0	0	0	2	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0010	2109	2	0	0	2	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0011	2109	2	2	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0012	2109	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0013	2109	1	1	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0014	2109	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0015	2109	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0016	2109	1	1	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0017	2109	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0018	2109	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0019	2109	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0020	2109	1	0	0	0	0	1	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0021	2109	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	c0022	2109	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VSIG10L2_chr11_125941044_125961319	0/1	c0001	2382	117	19	20	62	4	11	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0002	2382	108	17	12	71	2	6	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0003	2382	47	1	17	14	3	12	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0004	2382	42	1	12	25	0	4	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	1/0	c0005	2382	18	6	4	0	1	6	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0006	2382	17	0	1	14	0	2	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0007	2382	12	11	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0008	2382	11	0	6	5	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0009	2382	11	6	1	2	2	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0010	2382	9	8	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0011	2382	7	3	2	0	0	2	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0012	2382	6	6	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0013	2382	4	0	0	4	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0014	2382	4	3	1	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0015	2382	3	3	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0016	2382	2	0	0	2	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0017	2382	2	0	0	1	0	1	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0018	2382	2	0	0	0	0	2	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0019	2382	2	2	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0020	2382	2	2	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L2_chr11_125941044_125961319	0/0	c0021	2382	2	2	0	0	0	0	copy fasta	VSIG10L2	chr11	125941044	125961319