JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VSIG4_chrX_66016738_66045080	1/1	c0001	1200	203	39	38	83	11	30	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0002	1200	4	2	2	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0003	1200	2	0	0	0	0	2	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0004	1200	2	0	2	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0005	1200	2	0	2	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0006	1199	1	0	1	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0007	1200	1	1	0	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0008	1200	1	1	0	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	c0010	1201	1	0	0	1	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG8_chr1_159849316_159867657	1/1	c0001	1245	432	79	78	212	16	45	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0002	1245	11	9	2	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0003	1245	4	0	3	0	0	1	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0004	1245	3	3	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0005	1245	2	2	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0006	1245	2	1	1	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0007	1245	1	1	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0008	1245	1	1	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0009	1245	1	0	0	1	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	c0010	1147	1	0	0	1	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIR_chr10_71742556_71778520	0/0	c0001	936	118	12	20	75	5	6	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/1	c0002	936	112	12	18	48	6	27	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0003	936	80	12	18	40	2	8	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0004	936	62	37	8	15	1	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	1/0	c0005	936	55	0	11	37	2	4	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0006	936	9	8	0	0	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0007	936	6	3	2	0	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0008	936	5	4	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0009	936	3	0	1	0	0	2	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0010	936	3	2	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0011	936	3	2	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0012	936	2	2	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0013	936	1	0	0	1	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0014	947	1	0	0	1	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0015	936	1	0	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	c0016	936	1	0	0	1	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSNL1_chr2_17535696_17662018	1/1	c0001	576	232	82	54	54	16	24	copy fasta	VSNL1	chr2	17535696	17662018
VSTM1_chr19_54035825_54068897	0/0	c0001	711	259	58	35	134	6	26	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0002	711	57	25	11	11	4	6	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0003	711	56	1	12	31	5	7	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0004	711	44	11	20	8	1	4	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/1	c0005	711	11	0	2	7	0	1	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0006	711	5	0	1	4	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0007	711	3	0	2	0	1	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0008	711	2	1	1	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0009	711	1	0	0	1	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0010	711	1	1	0	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0011	711	1	1	0	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	c0012	711	1	0	0	0	1	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM2A_chr7_54537375_54576067	1/1	c0001	723	379	90	76	149	18	44	copy fasta	VSTM2A	chr7	54537375	54576067