JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VSTM2A_chr7_54537375_54576067	0/0	c0002	723	2	0	0	2	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	c0003	723	1	0	0	1	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2B_chr19_29520994_29569551	0/0	c0001	858	278	77	55	105	7	34	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0002	858	76	0	15	54	1	6	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0003	858	28	10	1	17	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0004	858	15	10	2	1	2	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0005	858	2	0	2	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0006	858	2	0	0	0	0	2	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0007	858	2	2	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0008	858	1	0	1	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0009	858	1	1	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	c0010	858	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2L_chr20_37898127_37950350	1/1	c0001	615	318	70	67	123	16	40	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	c0002	615	12	11	1	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	c0003	615	7	7	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	c0004	615	2	2	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	c0005	615	2	0	0	0	0	2	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	c0006	615	2	2	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	c0007	615	1	0	0	1	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM4_chr10_49009236_49120522	0/1	c0001	963	126	39	29	37	7	13	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0002	963	120	23	19	59	3	16	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0003	963	19	16	3	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0004	963	4	1	0	2	0	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0005	963	4	4	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0006	963	2	0	0	0	0	2	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0007	963	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0008	963	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0009	963	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	1/0	c0010	963	1	0	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	c0011	963	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM5_chr11_93813232_93855618	1/1	c0001	603	339	84	62	142	12	37	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0002	603	10	4	3	1	2	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0003	603	3	2	1	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0004	603	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0005	603	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0006	603	2	0	0	2	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0007	603	1	0	0	0	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	c0008	603	1	0	0	1	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSX1_chr20_25070463_25087141	1/1	c0001	1098	247	41	44	121	9	30	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0002	1098	75	31	21	3	4	16	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0003	1098	19	19	0	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0004	1098	8	4	4	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0005	1098	5	5	0	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0006	1098	4	0	0	4	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0007	1098	3	0	0	3	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0008	1098	2	0	1	0	1	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0009	1098	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0010	1098	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0011	1098	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	c0012	1098	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141