JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BOLA2B_chr16_30187932_30198666	0/0	c0001	261	254	62	50	104	14	24	copy fasta	BOLA2B	chr16	30187932	30198666
BOLA2_chr16_29448593_29459351	0/0	c0001	261	171	27	16	104	6	18	copy fasta	BOLA2	chr16	29448593	29459351
BOLA2_chr16_29448593_29459351	0/0	c0002	261	3	3	0	0	0	0	copy fasta	BOLA2	chr16	29448593	29459351
BOLA3_chr2_74130400_74152912	0/0	c0001	324	433	98	82	199	12	42	copy fasta	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	c0002	324	1	0	0	1	0	0	copy fasta	BOLA3	chr2	74130400	74152912
BOLL_chr2_197721890_197790319	1/1	c0001	852	321	72	65	149	10	23	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	c0002	852	5	4	1	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	c0003	852	1	0	0	0	0	1	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	c0004	852	1	0	0	1	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOP1_chr8_144257045_144296438	0/1	c0001	2241	317	48	75	138	16	39	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	1/0	c0002	2241	23	21	1	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0003	2241	8	5	0	0	0	3	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0004	2241	6	6	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0005	2241	5	5	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0006	2241	4	4	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0007	2241	4	0	1	0	2	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0008	2241	3	2	1	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0009	2241	3	0	0	3	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0010	2241	2	2	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0011	2241	2	0	0	2	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0012	2241	2	0	0	2	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0013	2241	2	2	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0014	2241	1	1	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0015	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0016	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0017	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0018	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0019	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0020	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0021	2241	1	1	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0022	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0023	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0024	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0025	2241	1	0	0	0	0	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0026	2241	1	0	0	0	0	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0027	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0028	2241	1	1	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0029	2241	1	0	0	0	0	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	c0030	2241	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BORA_chr13_72722923_72761196	1/1	c0001	1680	331	92	57	125	16	39	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0002	1680	38	0	0	36	1	1	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0003	1680	7	0	2	4	0	1	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0004	1680	4	1	1	0	1	1	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0005	1680	2	2	0	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0006	1680	2	0	2	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0007	1680	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0008	1680	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0009	1680	1	1	0	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	c0010	1680	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORCS6_chr17_8183345_8195180	1/0	c0001	1074	215	33	40	128	1	12	copy fasta	BORCS6	chr17	8183345	8195180