JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VSX1_chr20_25070463_25087141	0/0	c0013	1098	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX2_chr14_74234449_74267738	1/1	c0001	1086	313	80	35	160	8	28	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0002	1086	79	6	29	22	6	16	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0003	1086	11	0	8	2	0	1	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0004	1086	4	0	2	0	0	2	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0005	1089	4	4	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0006	1086	3	0	0	3	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0007	1086	2	1	0	0	0	1	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0008	1086	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0009	1086	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0010	1086	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0011	1086	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0012	1089	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	c0013	1086	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VTA1_chr6_142142263_142229685	1/1	c0001	924	325	86	60	139	10	28	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	c0002	924	4	3	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	c0003	924	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	c0004	924	1	0	0	0	0	1	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	c0005	924	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	c0006	924	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	c0007	924	1	0	0	0	0	1	copy fasta	VTA1	chr6	142142263	142229685
VTCN1_chr1_117138587_117215927	1/1	c0001	849	242	89	43	60	12	36	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	c0002	849	6	5	1	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTI1A_chr10_112442215_112823744	1/1	c0001	654	165	64	16	63	6	14	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	c0002	654	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	c0003	654	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	c0004	654	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1B_chr14_67642085_67679632	1/1	c0001	699	348	69	70	154	16	37	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0002	699	79	14	13	46	2	4	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0003	699	7	6	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0004	699	6	6	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0005	699	2	2	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0006	699	1	0	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0007	699	1	1	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0008	699	1	0	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	c0009	699	1	0	0	0	0	1	copy fasta	VTI1B	chr14	67642085	67679632
VTN_chr17_28362284_28375307	0/0	c0001	1437	208	58	39	84	8	19	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	1/1	c0002	1437	85	19	28	12	5	19	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0003	1437	74	11	9	47	1	6	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0004	1437	11	1	5	5	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0005	1437	3	3	0	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0006	1437	1	1	0	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0007	1437	1	0	0	0	0	1	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0008	1437	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0009	1437	1	1	0	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0010	1437	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0012	1437	1	0	0	1	0	0	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0013	1437	1	0	0	0	0	1	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	c0014	1437	1	0	1	0	0	0	copy fasta	VTN	chr17	28362284	28375307