JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWA1_chr1_1430690_1447882	0/0	c0001	1338	194	44	26	98	4	22	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	1/1	c0002	1338	45	13	15	0	5	10	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0003	1338	14	8	2	2	1	1	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0004	1338	9	9	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0005	1338	6	6	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0006	1338	4	0	0	4	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0007	1338	1	0	0	0	0	1	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0008	1338	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0009	1338	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0010	1338	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0011	1338	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0012	1338	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0013	1338	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	c0014	1338	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA2_chr10_114234254_114299489	0/0	c0001	2268	78	34	19	15	2	8	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	1/1	c0002	2268	62	9	24	16	3	8	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0003	2268	28	11	8	1	4	4	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0004	2268	12	1	1	7	0	3	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0005	2268	11	1	3	5	0	2	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0006	2268	9	2	2	5	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0007	2268	5	5	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0008	2268	4	4	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0009	2268	3	0	2	0	1	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0010	2268	3	3	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0011	2268	3	0	2	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0012	2268	3	0	0	3	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0013	2268	2	2	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0014	2268	2	0	1	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0015	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0016	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0017	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0018	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0019	2268	1	0	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0020	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0021	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0022	2268	1	0	0	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0023	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0024	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0025	2268	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0026	2268	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0027	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0028	2268	1	0	0	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0029	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0030	2268	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0031	2300	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0032	2268	1	0	0	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0033	2268	1	0	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0034	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	c0035	2268	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA3A_chr16_22087541_22161964	0/0	c0001	3555	96	21	16	46	1	12	copy fasta	VWA3A	chr16	22087541	22161964