JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWA3A_chr16_22087541_22161964	0/0	c0002	3555	80	28	1	45	1	5	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/1	c0003	3555	36	2	17	4	4	8	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	1/0	c0004	3555	20	1	2	14	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0005	3555	14	6	1	5	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0006	3555	8	0	3	0	0	5	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0007	3555	6	0	0	6	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0008	3555	3	0	1	0	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0009	3555	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0010	3555	2	0	0	2	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0011	3555	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0012	3555	2	0	0	2	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0013	3555	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0014	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0015	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0016	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0017	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0018	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0019	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0020	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0021	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0022	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0023	3555	1	0	1	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0024	3555	1	0	1	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0025	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0026	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0027	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0028	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0029	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0030	3555	1	0	0	0	0	1	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0031	3555	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0032	3555	1	0	0	0	0	1	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0033	3555	1	0	1	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	c0034	3555	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3B_chr2_98082167_98318299	0/1	c0001	3885	85	16	15	41	3	9	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0002	3885	53	10	16	20	6	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0003	3885	28	9	4	14	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0004	3885	11	3	4	3	0	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0005	3885	10	0	1	9	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0006	3885	6	0	3	2	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0007	3885	6	5	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0008	3885	5	5	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0009	3885	4	0	4	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0010	3885	3	3	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0011	3885	2	0	2	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0012	3885	2	2	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0013	3885	2	0	0	0	1	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0014	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0015	3885	1	0	0	0	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0016	3885	1	0	1	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0017	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299