JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWA3B_chr2_98082167_98318299	0/0	c0018	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0019	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0020	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0021	3885	1	0	0	0	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0022	3885	1	0	0	0	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0023	3885	1	0	0	0	0	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0024	3885	1	0	1	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	1/0	c0025	3885	1	0	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0026	3885	1	0	1	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0027	3885	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0028	3885	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0029	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0030	3885	1	0	0	0	1	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0031	3885	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0032	3885	1	0	0	0	0	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0033	3885	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0034	3885	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0035	3885	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	c0036	3885	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA5A_chr11_124110450_124152721	0/0	c0001	2361	177	17	35	105	9	11	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	1/1	c0002	2361	114	7	26	56	4	19	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0003	2361	32	10	2	11	5	4	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0004	2361	27	13	2	12	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0005	2361	9	0	0	9	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0006	2361	6	6	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0007	2361	5	5	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0008	2361	5	4	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0009	2361	5	0	4	0	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0010	2361	4	4	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0011	2361	4	3	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0012	2361	4	3	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0013	2361	3	0	0	0	0	3	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0014	2361	3	3	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0015	2361	3	3	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0016	2361	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0017	2361	2	1	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0018	2361	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0019	2361	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0020	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0021	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0022	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0023	2361	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0024	2361	1	0	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0025	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0026	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0027	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0028	2361	1	0	0	0	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0029	2361	1	0	0	0	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0030	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0031	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721