JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWA5A_chr11_124110450_124152721	0/0	c0032	2361	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0033	2361	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	c0034	2361	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5B1_chr1_20285875_20364518	1/0	c0001	3648	151	28	39	61	4	18	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0002	3648	57	1	8	36	3	9	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0003	3648	17	0	3	12	1	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0004	3648	10	8	2	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0005	3648	9	0	8	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0006	3648	7	0	5	0	2	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/1	c0007	3648	6	1	2	1	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0008	3648	6	5	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0009	3648	5	5	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0010	3648	5	4	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0011	3648	5	5	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0012	3648	4	4	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0013	3648	4	1	1	0	0	2	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0014	3648	4	4	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0015	3648	3	0	0	0	2	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0016	3648	3	0	0	3	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0017	3648	2	0	0	2	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0018	3648	2	0	0	2	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0019	3648	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0020	3648	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0021	3648	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0022	3648	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0023	3648	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0024	3648	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0025	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0026	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0027	3648	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0028	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0029	3648	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0030	3648	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0031	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0032	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0033	3648	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0034	3648	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0035	3648	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0036	3648	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0037	3648	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0038	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0039	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0040	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0041	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	c0042	3648	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B2_chr3_184224585_184247329	1/0	c0001	3729	166	31	34	73	10	17	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0002	3729	59	10	5	40	1	3	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/1	c0003	3729	31	6	10	1	4	9	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0004	3729	18	3	1	14	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0005	3729	16	13	3	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329