JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWA5B2_chr3_184224585_184247329	0/0	c0006	3729	7	7	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0007	3729	5	0	0	5	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0008	3729	3	1	2	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0009	3729	3	0	3	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0010	3729	2	2	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0011	3729	2	2	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0012	3729	2	2	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0013	3729	2	0	2	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0014	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0015	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0016	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0017	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0018	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0019	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0020	3729	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0021	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0022	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0023	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0024	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0025	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0026	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0027	3729	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0028	3729	1	0	0	0	1	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0029	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0030	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0031	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0032	3729	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0033	3729	1	0	0	1	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0034	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0035	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0036	3729	1	0	1	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0037	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0038	3729	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	c0039	3729	1	0	0	0	0	1	copy fasta	VWA5B2	chr3	184224585	184247329
VWA7_chr6_31760590_31782328	0/1	c0001	2676	355	59	69	170	14	42	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0002	2676	14	10	0	4	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0003	2690	6	1	3	0	1	1	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0004	2676	5	3	0	2	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0005	2676	5	0	3	0	2	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0006	2676	4	4	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0007	2676	4	0	0	1	0	3	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0008	2676	4	3	1	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0009	2676	3	1	1	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0010	2676	3	0	1	2	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0011	2676	2	2	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0012	2676	2	2	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0013	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0014	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0015	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0016	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328