JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWA7_chr6_31760590_31782328	0/0	c0017	2690	1	0	1	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0018	2676	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0019	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0020	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0021	2676	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0022	2714	1	0	1	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0023	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0024	2676	1	0	0	0	1	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0025	2676	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0026	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0027	2676	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	c0028	2676	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA8_chr13_41561835_41966109	1/1	c0001	5718	129	30	21	55	6	15	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0002	5718	44	1	11	19	3	10	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0003	5718	22	5	4	12	0	1	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0004	5718	10	0	5	5	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0005	5718	7	4	0	2	0	1	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0006	5718	7	3	1	0	0	3	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0007	5718	6	3	1	2	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0008	5718	3	3	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0009	5718	3	2	1	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0010	5718	2	0	0	0	0	2	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0011	5718	2	2	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0012	5718	2	1	0	0	1	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0013	5718	1	0	1	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0014	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0015	5718	1	0	1	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0016	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0017	5718	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0018	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0019	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0020	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0021	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0022	5718	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0023	5718	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0024	5718	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	c0025	5718	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWC2L_chr2_214406054_214583976	1/1	c0001	669	276	77	59	108	8	22	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	c0002	669	6	5	1	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2_chr7_49768638_49926950	1/0	c0001	978	119	29	25	36	5	23	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/1	c0002	978	105	37	25	19	7	16	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	c0003	978	26	12	1	9	0	4	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	c0004	978	4	1	3	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	c0005	978	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	c0006	978	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWCE_chr11_61253286_61300316	1/1	c0001	2868	118	35	24	34	10	13	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0002	2868	16	14	1	0	0	1	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0003	2868	7	5	1	0	0	1	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0004	2868	7	6	1	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0005	2868	6	0	0	6	0	0	copy fasta	VWCE	chr11	61253286	61300316