JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BORCS6_chr17_8183345_8195180	0/1	c0002	1074	193	56	37	54	13	32	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	c0003	1074	2	0	0	2	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	c0004	1074	2	0	0	0	2	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	c0005	1074	1	0	0	1	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	c0007	1074	1	0	0	1	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	c0008	1074	1	0	1	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS7_chr10_102849259_102869961	1/1	c0001	321	449	91	77	216	16	47	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	c0002	321	3	3	0	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	c0003	321	1	0	1	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	c0004	321	1	0	0	0	0	1	copy fasta	BORCS7	chr10	102849259	102869961
BORCS8_chr19_19171906_19197152	1/1	c0001	360	407	86	77	180	16	46	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	c0002	360	15	14	1	0	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	c0003	360	3	0	0	3	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	c0004	360	3	0	0	3	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BPGM_chr7_134641853_134684816	1/1	c0001	780	357	81	68	153	16	37	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	c0002	780	1	0	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	c0003	780	1	0	0	0	0	1	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	c0004	780	1	0	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	c0005	780	1	0	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	c0006	780	1	1	0	0	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPHL_chr6_3113711_3158578	1/1	c0001	876	287	56	51	140	8	30	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0002	876	18	3	6	7	0	2	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0003	876	16	16	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0004	876	8	6	2	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0005	876	6	6	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0006	876	6	1	0	2	0	3	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0007	876	4	3	1	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0008	876	3	0	0	0	0	3	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0009	876	1	1	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	c0010	876	1	0	0	1	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPIFA1_chr20_33230996_33248306	1/1	c0001	771	349	65	71	164	12	35	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	c0002	771	32	31	1	0	0	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	c0003	771	1	0	0	0	0	1	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA2_chr20_33163159_33186412	1/1	c0001	750	289	34	63	139	14	37	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0002	750	29	13	4	12	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0003	750	29	28	1	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0004	750	7	5	2	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0005	750	5	0	0	5	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0006	750	4	4	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0007	750	3	3	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0008	750	3	3	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0009	750	2	2	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0010	750	2	0	0	0	0	2	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0011	750	2	0	2	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0012	750	1	1	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0013	750	1	0	0	0	0	1	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	c0014	750	1	1	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA3_chr20_33212352_33232806	0/1	c0001	765	255	60	29	135	6	24	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	1/0	c0002	765	129	23	39	37	10	19	copy fasta	BPIFA3	chr20	33212352	33232806