JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
VWF_chr12_5943877_6129670	0/0	c0042	8442	2	0	0	2	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0043	8442	2	0	0	2	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0044	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0045	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0046	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0047	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0048	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0049	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0050	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0051	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0052	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0053	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0054	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0055	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0056	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0057	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0058	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0059	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0060	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0061	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0062	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0063	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0064	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0065	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0066	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0067	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0068	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0069	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0070	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0071	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0072	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0073	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0074	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0075	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0076	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0077	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0078	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0079	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0080	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0081	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0082	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0083	8442	1	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0084	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0085	8442	1	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0086	8442	1	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0087	8442	1	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0088	8442	1	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0089	8442	1	0	0	1	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0090	8442	1	0	0	1	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0091	8442	1	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670