JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWF_chr12_5943877_6129670	0/0	c0192	8442	1	0	1	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VXN_chr8_66488566_66523524	1/1	c0001	624	299	90	62	104	11	30	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	c0002	624	25	0	5	20	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	c0003	624	6	0	3	0	3	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	c0004	624	2	2	0	0	0	0	copy fasta	VXN	chr8	66488566	66523524
WAC_chr10_28528118_28628112	1/1	c0001	1944	302	71	65	126	12	26	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	c0002	1944	10	9	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	c0003	1944	4	3	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	c0004	1944	3	2	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	c0005	1944	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	c0006	1944	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	c0007	1944	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAPL_chr10_86430256_86526792	0/1	c0001	3573	227	57	45	94	9	21	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	1/0	c0002	3573	107	16	17	68	1	4	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0003	3573	57	3	8	28	4	14	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0004	3573	6	5	1	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0005	3573	4	4	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0006	3573	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0007	3573	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0008	3573	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0009	3573	1	0	0	0	1	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0010	3573	1	0	1	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0011	3573	1	0	0	1	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0012	3573	1	0	0	0	0	1	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0013	3573	1	0	0	1	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	c0014	3573	1	0	0	0	1	0	copy fasta	WAPL	chr10	86430256	86526792
WARS1_chr14_100328790_100380347	0/1	c0001	1416	200	43	36	87	9	24	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	1/0	c0002	1416	126	51	9	56	5	4	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	c0003	1416	4	0	0	4	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	c0004	1416	3	3	0	0	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	c0005	1416	2	0	0	0	0	2	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	c0006	1416	1	0	1	0	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	c0007	1416	1	1	0	0	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	c0008	1416	1	0	0	1	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS2_chr1_119026216_119145653	1/0	c0001	1083	260	61	52	117	6	23	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/1	c0002	1083	64	15	4	42	1	1	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0003	1083	18	6	4	1	0	7	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0004	1083	4	4	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0005	1083	2	1	0	0	1	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0006	1083	2	2	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0007	1083	1	0	0	0	0	1	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0008	1083	1	0	0	1	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0009	1083	1	0	0	1	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	c0010	1083	1	1	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WASF1_chr6_110094819_110184670	1/1	c0001	1680	239	69	40	98	7	23	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	c0002	1680	18	10	6	0	1	1	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	c0003	1680	1	1	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	c0004	1680	1	0	0	1	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	c0005	1680	1	0	0	1	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	c0006	1680	1	1	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670