JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WASF1_chr6_110094819_110184670	0/0	c0007	1680	1	1	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF2_chr1_27399230_27495167	1/1	c0001	1497	198	72	39	56	8	21	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	c0002	1497	56	7	2	40	0	7	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	c0003	1497	3	3	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	c0004	1497	2	2	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	c0005	1497	1	0	1	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF3_chr13_26552683_26693948	1/1	c0001	1509	210	35	45	100	6	22	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0002	1509	55	30	13	3	4	5	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0003	1509	20	8	4	7	0	1	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0004	1509	4	4	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0005	1509	2	2	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0006	1509	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0007	1509	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	c0008	1509	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASHC2A_chr10_50062954_50138509	0/0	c0001	4026	78	3	10	53	1	11	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/1	c0002	4026	61	2	13	35	4	6	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0003	4026	32	1	20	9	0	2	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	1/0	c0004	4026	20	16	3	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0005	4026	15	13	2	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0006	4026	15	0	0	15	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0007	4026	11	10	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0008	4026	10	4	0	6	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0009	4026	4	0	0	4	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0010	4026	4	0	2	2	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0011	4026	4	3	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0012	4026	3	0	0	3	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0013	4026	3	0	3	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0014	4026	3	1	0	0	0	2	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0015	4026	3	2	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0016	4023	3	0	0	3	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0017	4026	2	0	0	0	0	2	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0018	4026	2	1	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0019	4026	2	1	0	0	1	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0020	4026	2	0	1	0	0	1	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0021	4026	1	0	0	0	1	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0022	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0023	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0024	4050	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0025	4026	1	0	0	0	0	1	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0026	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0027	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0028	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0029	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0030	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0031	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0032	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0033	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0034	4026	1	0	0	0	1	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0035	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0036	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509