JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WASHC2A_chr10_50062954_50138509	0/0	c0037	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0038	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0039	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0040	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0041	4026	1	0	0	0	0	1	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0042	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0043	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0044	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0045	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0046	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0047	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0048	4026	1	0	0	1	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0049	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0050	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0051	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0052	4026	1	0	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	c0053	4026	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2C_chr10_45722266_45797964	0/0	c0001	4026	86	11	8	54	1	12	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0002	4026	79	12	27	21	6	13	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	1/0	c0003	4026	37	7	3	21	0	5	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/1	c0004	4026	31	0	17	8	2	3	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0005	4026	27	1	0	21	3	2	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0006	4026	14	1	2	10	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0007	4026	13	11	2	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0008	4026	12	1	3	8	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0009	4026	11	10	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0010	4026	11	5	1	5	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0011	4026	7	1	0	6	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0012	4026	7	6	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0013	4026	4	0	1	0	3	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0014	4026	4	3	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0015	4026	3	0	1	2	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0016	4026	3	0	0	3	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0017	4023	3	0	0	3	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0018	4026	3	3	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0019	4026	2	1	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0020	4026	2	0	0	1	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0021	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0022	4026	1	0	0	1	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0023	4026	1	0	0	0	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0024	4026	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0025	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0026	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0027	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0028	4026	1	0	0	0	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0029	4026	1	0	0	0	1	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0030	4026	1	0	0	1	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0031	4026	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0032	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0033	4026	1	0	0	1	0	0	copy fasta	WASHC2C	chr10	45722266	45797964