JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WASHC2C_chr10_45722266_45797964	0/0	c0034	4026	1	0	0	0	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0035	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0036	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0037	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0038	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0039	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0040	4026	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	c0041	4026	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC3_chr12_102007840_102066991	1/1	c0001	585	206	64	39	75	7	19	copy fasta	WASHC3	chr12	102007840	102066991
WASHC3_chr12_102007840_102066991	0/0	c0002	585	150	30	19	89	3	9	copy fasta	WASHC3	chr12	102007840	102066991
WASHC4_chr12_105102731_105174130	0/1	c0001	3522	334	78	66	151	7	31	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0002	3522	20	0	0	20	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0003	3522	9	0	3	0	1	5	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	1/0	c0004	3522	7	0	2	0	4	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0005	3522	4	0	0	4	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0006	3522	3	2	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0007	3522	2	2	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0008	3522	2	0	0	2	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0009	3522	2	0	2	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0010	3522	2	2	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0011	3522	1	0	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0012	3522	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0013	3522	1	0	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0014	3522	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0015	3522	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0016	3522	1	0	0	0	0	1	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0017	3522	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0018	3522	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0019	3522	1	0	0	0	0	1	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0020	3522	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	c0021	3522	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC5_chr8_125019260_125096792	1/1	c0001	3480	249	28	53	132	10	24	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0002	3480	47	38	6	0	2	1	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0003	3480	25	1	0	17	1	6	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0004	3480	7	7	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0005	3480	4	2	2	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0006	3480	2	2	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0007	3480	2	2	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0008	3480	2	0	0	2	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0009	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0010	3480	1	0	0	0	1	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0011	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0012	3480	1	0	0	1	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0013	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0014	3480	1	0	0	1	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0015	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0016	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0017	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0018	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0019	3480	1	0	1	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792